PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010913902.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 298aa    MW: 31062.6 Da    PI: 9.8037
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010913902.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.13.5e-09102127227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lC+ +     Ck+G++C+FaHg+
  XP_010913902.1 102 KTRLCNKYNTAEGCKFGEKCHFAHGE 127
                     8***********************96 PP

2zf-CCCH375.5e-12265289126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC +fa+ G C +GdrC+FaHg
  XP_010913902.1 265 FKTKLCENFAK-GACTFGDRCHFAHG 289
                     69*********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.83461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-53561IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-73659IPR000571Zinc finger, CCCH-type
PfamPF146081.64259No hitNo description
Gene3DG3DSA:4.10.1000.101.6E-1496132IPR000571Zinc finger, CCCH-type
SMARTSM003560.0038100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.648100128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-8100131IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-6102127IPR000571Zinc finger, CCCH-type
SuperFamilySSF547919.79E-16164243IPR004088K Homology domain, type 1
SMARTSM003223.2E-11170240IPR004087K Homology domain
PROSITE profilePS5008414.278171235IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.107.4E-16171239IPR004088K Homology domain, type 1
CDDcd001052.70E-14173235No hitNo description
PfamPF000133.6E-11173237IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.107.5E-16263295IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-8264290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.558264291IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-9264294IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9265289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
METARKRGRL DATNGGAAGP KRLKEMESFQ HGLGSKSKPC TKFFSTAGCP FGEGCHFLHY  60
VPGGIQAVAQ MTNLGNPAVP PSVRNPMVPP AFSDGPPGPA VKTRLCNKYN TAEGCKFGEK  120
CHFAHGEREL GKPIIPSQDG PIAPPTGGRL AGRLEPPPPA GLPAAASFGA SATAKISVDA  180
SLAGAIIGKG GVNTKQICRI TGVRLAIRDH ESDPNLRNIE LEGTFDQIKN ASAMVRELIV  240
NISSMTSLPV KNPAVVAPAG SGNNFKTKLC ENFAKGACTF GDRCHFAHGA SELRKAAA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010913902.10.0PREDICTED: zinc finger CCCH domain-containing protein 31
SwissprotQ7F8R01e-133C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM0TF801e-161M0TF80_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P06400_0011e-161(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.19e-51C3H family protein